proMGE v1.0
proMGE is a resource for the retrieval of 6 Mobile Genetic Element (MGE) categories in 76K genomes (totalling to 2.4 million prokaryotic MGEs) and classification of new ones in user provided protein sequences from genomes and genomic fragments. Read more
76K genomes | 2.8 million marker genes | 2.4 million MGEs
IS element and Transposon (IS_Tn)
Prokaryotic Insertion Sequences (IS) and transposons annotated based on the presence of transposase specific recombinase subfamilies.
Phage
MGEs containing Phage recombinase subfamily proteins with phage structural genes in the neighbourhood.
Phage_like
MGEs containing only Phage recombinase subfamily proteins without phage structural genes in the neighbourhood.
Conjugative elements (CE)
Plasmids and Integrative Conjugative Elements (ICEs) annotated based on presence of type specific recombinase subfamily proteins and presence of conjugation machinery genes in the neighbourhood.
Mobility island (MI)
Genomic islands containing recombinase subfamily proteins common to Phage and Conjugative elements, without the presence of either of phage structural genes or conjugation machinery genes in the neighbourhood.
Cellular recombinase
Recombinase subfamily protein (Xer-like) associated with host cellular function.